dens_init.txt	// pop source file
GeneSamples.sam	// original genetic sample file
Nodes.txt	// river segment node file input
Segments.txt	// river segment file input
dynamic_maps.txt	// dynamic environment file

1000	// carrying capacity per segment
2	// demographic model (1-4)
250	// number of generations
4	// generation time
1000	// real time BP of simulation start
0.5	// growth rate
1	// allow initial density overflow? (0/1)
1	// rate for initial Density overflow (0-1)
0	// static or dynamic environment? (0/1)
10	// number of demographic simulations (entire simulations / only console version)
1	// number of genetic simulations per demographic simulation
10000	// maximum number of simulated generations
0	// data type (0: MICROSAT, 1: RFLP, 2: DNA, 3: STANDARD, 4: SNP)
2	// number of independent loci
1	// number of linked loci
1	// should the output contain genotypic (1) or haplotypic data (0)?
0.0005	// mutation rate per unlinked locus (per microsat / per sequence)
0.33	// fraction of substitutions being transitions for DNA
0	// gamma A for DNA mutation variation
1	// number of categories for DNA mutation variation
0	// range constrain for microsatellite
0	// geometric distribution of the GSM for microsats (0: SSM)
0.1	// minimum frequency of SNP (0: not considered)
0	// minimum frequency of SNP within at least one sample (0: not considered)
1	// generate Arlequin output (0/1)
0	// generate coalescence image output? (0/1)
0	// generate coalescence times output? (0/1)
0	// generate genetic trees output? (0/1)
0	// generate MRCA times output? (0/1)
500	// divergence time in generations
0.6	// migration rate for un-colonized segments (migrCol: 0-1)
0.6	// migration rate for colonized segments (migrOcc: 0-1)
1	// upstream migration ratio (1: upstream = downstream)
0	// transform segments to this length in meter (0: use original drainage)
END
